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Boutique hotels in La Crosse

Find and book unique boutique hotels on Airbnb

Top-rated boutique hotels in La Crosse

Guests agree: these boutique hotels are highly rated for location, cleanliness and more.

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Guest favourite
The historic Burlington Hotel features a striking red brick facade with white accents, showcasing a classic balcony on the second level. The entrance is framed by windows, while colorful flowers line the base, contributing to a welcoming atmosphere. Trees and greenery are visible in the background.
Hotel room in Alma
4.96 out of 5 average rating, 24 reviews

ALL 5 BEDROOMS !! - Burlington Hotel & Bar

The Burlington Hotel & Bar was built with 12 sleeping rooms for railroad workers in 1891. Located in Alma along the Mississippi River and still along active railroad tracks, it was added to the National Register of Historical Places in 1982. The hotel now features 5 bedrooms for up to 12 guests, a bar & a shop called 'Queen Bee Alma' offering crochet & craft classes. Location: 1/2 mile from the marina/beach, a few doors down from Kwik Trip, and a short walk to the bars & shops, downtown Alma.

Guest favourite
The room features a queen bed with a textured headboard against a light wall. A window offers views of the surrounding greenery, and a television is mounted on the opposite wall. Additional details include a bedside lamp and a small shelving unit.
Hotel room in Lanesboro
5 out of 5 average rating, 5 reviews

Root River Inn, Whalan En Suite

This room, named after the smallest town on the Root River Trail, is our smallest room. Perfect if you just plan to sleep here an be out enjoying the day. There is a bench and a stool in the room. This room has a window overlooking main street. You can see the bike trail and the bridge from your room. Recline in your queen bed and watch the Roku TV where you can watch many free channels or log into your own services. This room has the sink in the room and toilet and shower in the bathroom.

Guest favourite
A bright corner showcases a modern white chair set against textured black walls. A vibrant artwork featuring a blue face decorates the door, while another colorful painting adds visual interest nearby. Natural light enters through a tall window, illuminating the polished concrete floor.
Hotel room in Sparta
4.94 out of 5 average rating, 18 reviews

b3 Room1: Awareness King Suite

Where creativity meets comfort, where art inspires at every corner, and every detail is designed to bring you joy. Welcome to b3experience, a one-of-a-kind art-inspired micro-hotel in the heart of Sparta, Wisconsin. Whether you seek adventure or tranquility, b3experience offers unforgettable memories. Rent a single suite for a business trip or romantic weekend, or bring your friends and rent multiple of our 4 private suites, each with their own private full bathroom, for a unique getaway!

Superhost
A cozy bedroom is highlighted by a king-sized bed dressed in dark bedding, complemented by bright green pillows. Soft, glowing blue lighting enhances the modern decor, while a sleek fireplace feature adds a touch of warmth to the ambiance.
Hotel room in Sparta
4.71 out of 5 average rating, 7 reviews

b3 Room2: Brain King Suite

Where creativity meets comfort, where art inspires at every corner, and every detail is designed to bring you joy. Welcome to b3experience, a one-of-a-kind art-inspired micro-hotel in the heart of Sparta, Wisconsin. Whether you seek adventure or tranquility, b3experience offers unforgettable memories. Rent a single suite for a business trip or romantic weekend, or bring your friends and rent multiple of our 4 private suites, each with their own private full bathroom, for a unique getaway!

Guest favourite
The room features a cozy seating area with a plush couch, complemented by a spacious bed adorned with floral bedding. A Jacuzzi tub is positioned nearby, offering convenience for relaxation. Natural light enters through the window, illuminating the wooden floors and charming decor.
Hotel room in Alma
4.96 out of 5 average rating, 28 reviews

The Tritsch House Walser Room

Enjoy a private room in this fully remodeled 1902 Queen Anne. The Walser Room has a private bathroom with shower, as well as a Jacuzzi tub. Guests have access to all of the main level common areas including the parlor, living and dining rooms, and any one of the three porches. Two of these porches have Mississippi River views. Guests also love hanging out in the newly remodeled kitchen. Sorry, but microwave only cooking. This is not a bed and breakfast and breakfast is not provided.

A cozy bedroom is presented with a vintage wooden bed framed by delicate floral wallpaper. A light-drenched window, adorned with flowing blue curtains, complements the space. A floor lamp stands to one side, while a plush chair is positioned near the wall.
Hotel room in Wabasha
4.6 out of 5 average rating, 5 reviews

AH #24 Full w/Shower

We think you will find our historic hotel charming with authentic period furniture and cozy rooms with modern amenities. Modern amenities include as central air and heating, WIFI, flat screen TVs and private bathrooms. Be sure to make a reservation with the front desk to relax in our new Sauna Room located on the 2nd floor. We’re located near local businesses including a quaint coffee shop just behind the hotel, multiple restaurants and shops all located near the Mississippi River.

The welcoming lobby features a large stone fireplace surrounded by comfortable seating, including a full-size sofa and armchairs. A decorative coffee table sits centrally, adorned with floral arrangements and vases. Natural light flows from nearby windows, contributing to a warm ambiance.
Hotel room in La Crosse
4.56 out of 5 average rating, 130 reviews

Suite in Hotel

The GrandStay Hotel & Suites La Crosse is located in beautiful downtown, steps from the Mississippi River and International Friendship Gardens. Our One Bedroom Suite offers a queen size bed in a separate bedroom, full kitchen with place settings for four and table with two chairs . In the living area of the suite guests can relax on a full size sofa sleeper and club chair with ottoman. We offer complimentary Grand Start Breakfast, free internet and free parking.

Superhost
A bright, airy room features two spacious beds with white bedding and wooden headboards. A small table and chair are placed near the doors, which lead to a balcony overlooking the lush landscaping. Natural light fills the space through large windows.
Hotel room in Lanesboro

Root River Inn, Houston En Suite

You'll be close to the outdoors in this balcony facing room. Sit outside your room and enjoy the view of the landscaping. Your table is there when you want to make your day plans, get a bit of work done or play a game, but folds up if you need some extra space. Get some rest in your queen or full bed after a great day or recline and watch the Roku TV where you have access to many free channels or log into your own services. All our rooms have a full bath.

Superhost
The room features a spacious bed with a wooden headboard, complemented by bedside lighting. A window provides natural light and views of greenery outside. A small side table and a foldable storage unit are visible, enhancing the room's functionality.
Hotel room in Lanesboro

Root River Inn, Fountain En Suite

his bright and airy room has windows overlooking the terraced garden and main street. You can see the bike trail, the bridge and the river from your room. Plan your next adventure at your sitting area. Recline in your queen bed and watch the Roku TV where you can watch many free channels or log into your own services. The couch folds down for an extra bed if needed. All our rooms have a full private bath.

Guest favourite
The room features a wooden bed with a decorative headboard and an intricately patterned green bedspread. A cozy seating area is present beside the bed. A door leads to a private bathroom equipped with a bathtub, while light enters through a nearby window.
Hotel room in Alma
4.92 out of 5 average rating, 25 reviews

Belle of Alma-1BR/1BA w/Jacuzzi @The Tritsch House

Enjoy a private room in this fully remodeled 1902 Queen Anne. Guests have access to all of the main level common areas including the parlor, living and dining rooms, and any one of the three porches. Two of these porches have Mississippi River views. Guests also love hanging out in the newly remodeled kitchen. Sorry, but microwave only cooking.

A cozy common area features rustic wooden beams and a stone fireplace. Leather sofas and wooden chairs surround a circular coffee table, while soft lighting creates a relaxed ambiance. A large area rug adds warmth to the space, enhancing the lodge-style atmosphere.
Hotel room in Onalaska
4.5 out of 5 average rating, 4 reviews

Stoney Creek, Deluxe 2 Queen, Cozy Rooms | 3 Units

Explore Vibrant La Crosse: Downtown shopping, dining & cultural scene. Scenic bluffs, hiking, biking & paddling in the Mighty Mississippi River! Immerse in local art, music & theater scenes. Conveniently located near attractions. Discover the adventure of La Crosse, WI!

Guest favourite
A cozy sleeping area features a wooden bed adorned with a multi-patterned quilt. Stone walls provide a unique texture, while soft lighting is offered by wall sconces. A compact kitchenette is visible in the background, with wooden cabinetry and modern finishes.
Hotel room in Lanesboro
4.89 out of 5 average rating, 19 reviews

Stone Mill Hotel & Suites - Forest Whirlpool Suite

The Lanesboro area has many natural forest settings. Beautiful hardwoods and stately pines are testimony to area goals of sustainability and ecological land management. The Forest Suite provides a nature scene with a bubbling double whirlpool bath.

Popular amenities for La Crosse boutique hotels

Quick stats about boutique hotels in La Crosse

  • Total holiday rentals

    Explore 30 holiday rentals in La Crosse

  • Nightly prices starting at

    La Crosse holiday rentals start at ₹11,590 per night before taxes and fees

  • Verified guest reviews

    Over 150 verified reviews to help you choose

  • Family-friendly holiday rentals

    10 properties offer extra space & child-friendly amenities

  • Pet-friendly holiday rentals

    Find 20 rentals that welcome pets

  • Holiday rentals with a pool

    30 properties feature pools

  • Rentals with dedicated workspaces

    20 properties have a dedicated workspace

  • Wifi availability

    30 of La Crosse holiday rentals include wifi access

  • Popular amenities for guests

    Guests love Kitchen, Wifi and Pool across La Crosse rentals

  • 4.6 Average rating

    La Crosse stays receive an average rating of 4.6 out of 5 from guests